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aminosee v1.32.8

A unique visualisation of any large chunk of DNA or RNA residing in ASCII text files (such as FASTA, GBK etc and also just .txt like my hand-made test files), AminoSee is a way to render huge genomics files into a left-to-right top-bottom PNG linear image, a 2D infinite space filling square curve from 18th century, and a 3D hilbert curve from this century! Computation is done locally, without the files leaving your machine. A back-end terminal daemon cli command that can be scripted is combined with a front-end GUI using the Carlo, AminoSee features asynchronous streaming processing enabling arbitrary size files to be processed. It has been tested with files in excess of 4 GB and does not need the whole file in memory at any time. Try running 'aminosee *' in a directory with DNA files, or better run the batch script 'batch-peptides.sh'. The folder 'dna' is provided for bulk rendering it already has those scripts present. The GUI is not finished at this time. it is using THREEjs and a 3D Hilbert Curve, Carlo. Command line options allow one to filter by peptide, for example 'aminosee * --peptide=Ochre'. Allows genomics researchers to convert any file containing blocks of text format DNA (Fasta, GBK, .txt) into an interactive experience.

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